SNP Profiles matching AMAZ 12

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_Input profile	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
1._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
2._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
3._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
4._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
5._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
6._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
7._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
8._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
9._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
10._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
11._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
12._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
13._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
14._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
15._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
16._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	_	AT	AG	TT	AA	CT
17._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	_	AT	AG	TT	AA	CT
18._RUQ_40	_	AA	CG	CC	_	_	-	_	_	_	_	TT	AA	_
19._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AG	CT
20._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
1._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
2._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
3._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
4._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
5._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
6._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
7._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
8._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
9._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
10._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
11._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
12._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
13._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
14._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
15._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
16._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
17._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
18._RUQ_40	_	_	_	CT	GG	GT	_	CT	AC	CC	GT	CT	AC	AG
19._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
20._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG

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_Input profile	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
1._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
2._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
3._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
4._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
5._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
6._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
7._GC-05-010-1-10	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
8._GC-05-010-1-10	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
9._GC-05-010-1-10	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
10._GC-05-010-1-10	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
11._GC-05-010-1-10	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
12._GC-05-158-4-11	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
13._GC-05-158-4-11	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
14._AMAZ_12	GG	AT	CT	AA	CG	_	GT	CC	AA	GG	X_X	X_X	X_X	X_X
15._GC-05-158-4-11	GG	AT	CT	AA	CG	_	GT	CC	AA	GG	X_X	X_X	X_X	X_X
16._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	_	AA	GG	X_X	X_X	X_X	X_X
17._GC-05-158-4-11	GG	AT	CT	AA	CG	CT	GT	_	AA	GG	X_X	X_X	X_X	X_X
18._RUQ_40	_	AT	-	AA	CG	CT	GT	CC	_	_	X_X	X_X	X_X	X_X
19._AMAZ_12	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
20._GC-05-158-4-11	GG	AT	CT	AA	CG	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X

Input profile: AMAZ_12

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Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

2._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

3._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

4._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

5._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

6._AMAZ_12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

7._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

9._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

11._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._AMAZ_12 GC-05-158-4-11

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

13._AMAZ_12 GC-05-158-4-11

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._AMAZ_12

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

15._AMAZ_12 GC-05-158-4-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

16._AMAZ_12

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

17._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._RB_33_/3_[BRA] RUQ_40

identical
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._AMAZ_12

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

20._AMAZ_12 GC-05-158-4-11

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25